Paul MatsudairaManagement2020-08-12T10:32:27+08:00
Paul MATSUDAIRA

Paul MATSUDAIRA

Founding Deputy Director and Professor, Mechanobiology Institute, National University of Singapore

dbsmpt@nus.edu.sg

Curriculum Vitae

Research Program
Leader, Mechanotransduction in Tissues

Affiliations
Emeritus Professor, Department of Biological Sciences, National University of Singapore

Emeritus Professor, Centre for BioImaging Sciences, Department of Biological Sciences, National University of Singapore

MBI Hosts Students from Raffles Girls School!

MBI hosted students from Raffles Girls School on 28 April 2026, for an outreach session designed to spark curiosity about mechanobiology and research careers.

By Yee Shu Brenda|Apr 29th, 2026|Categories: MBInsights, News|Comments Off on MBI Hosts Students from Raffles Girls School!

Paul Matsudaira

Emeritus Professor

Research Areas

Mechanobiology of cells and tissues on viscoelastic surfaces, nanoscale dynamics, biomaging sciences.

Research Interests

The Matsudaira Lab studies the role of mechanics in epithelial tissue migration and remodeling during development and disease. The organization and migration of epithelial tissues are sensitive to the underlying substratum, especially on visco-elastic substrates. This range of stiffness defines the environment of most basement membranes, cell-cell interactions, and early developmental processes. On the one hand, the lab is interested in the mechanical signatures of the development of chirality, convergence, and extension during the early steps in morphogenesis of the Zebrafish embryo. Other studies are focused on the role of substrate viscoelasticity in tissue remodeling during disease and its regulation by cell-matrix and cell-cell signaling pathways. In order to study complex, multi-scale dynamics the lab develops and applies novel imaging methods such as in situ TEM and strain light-sheet microscopy.

Biography

Formerly a biology and bioengineering professor at the Massachusetts Institute of Technology (MIT), Paul Matsudaira has studied the cytoskeleton since graduating from college. He was the EM technician of Tom Schroeder where he helped investigate the role of microfilaments in the contractile ring. As a graduate student of Dave Burgess he identified the structure and function of the intestine brush border cytoskeleton. Following postdoctoral research on the assembly of actin bundles at the MPI Biophysical Chemistry with Klaus Weber and the MRC LMB with Alan Weeds, Paul started his academic career at the Whitehead Institute and MIT where his lab studied biophysics of actin and other polymer protein bundles, mechanics of polymers and single cells motility, and developed microanalytical methods. In 2009, he moved to Singapore to establish the Centre for BioImaging Sciences, head the Department of Biological Sciences, and help found the Mechanobiology Institute, National University of Singapore.

Education

PhD in Biological Sciences from Dartmouth College, Hanover, New Hampshire

Selected Publications (5 of 177)

  1. Zheng J, Han SP, Chiu YJ, Yip AK, Boichat N, Pauli AR, Zhu S, Matsudaira P. 2017 Substrate viscoelasticity induces coalescence of epithelial monolayers via subcellular redistribution of vinculin. Biophys J. 113:1585-98.
  2. Loh D, Sen S, Bosman M, Tan SF, Zhong J, Nijhuis C, Kral P, Matsudaira P, Mirsaidov U. 2016 Multi-step nucleation of nanocrystals in aqueous solution. Nat. Chem 9:77-82.
  3. Ai Kia Yip, Keng-Hwee Chiam and Paul Matsudaira. Traction stress analysis and modeling reveal that amoeboid migration in confined spaces is accompanied by expansive forces and requires the structural integrity of the membrane–cortex interactions. Integrative Biology, 2015, DOI: 10.1039/ C4IB00245H. First published online 27 May 2015
  4. Bhattacharya D, Singh V R, Zhi C, Peter T C, Matsudaira P, Barbastathis G. 2012. Three dimensional HiLo-based structured illumination for a Digital Scanned Laser Sheet Microscopy (DSLM) in thick tissue imaging. Optics Express 20(25):27337-27347.
  5. Mirsaidov UM, Zheng H, Bhattacharya D, Casana Y, Matsudaira P. 2012. Imaging protein structure in water at 2.7 nm resolution by TEM. Biophys J. 102:L15-7.

Recent Publications

  1. Zhu S, Loo YT, Veerapathiran S, Loo TYJ, Tran BN, Teh C, Zhong J, Matsudaira P, Saunders TE, and Wohland T. Receptor binding and tortuosity explain morphogen local-to-global diffusion coefficient transition. Biophys J 2024;. [PMID: 39049492]
  2. Tavakoli S, Zhu S, and Matsudaira P. Cell clusters containing intestinal stem cells line, the zebrafish intestine intervillus pocket. iScience 2022; 25(5):104280. [PMID: 35586068]
  3. Bhattacharya D, Zhong J, Tavakoli S, Kabla A, and Matsudaira P. Strain maps characterize the symmetry of convergence and extension patterns during zebrafish gastrulation. Sci Rep 2021; 11(1):19357. [PMID: 34588480]
  4. Wu H, Ng DTW, Cheong I, and Matsudaira P. The degradation-promoting roles of deubiquitinases Ubp6 and Ubp3 in cytosolic and ER protein quality control. PLoS ONE 2020; 15(5):e0232755. [PMID: 32401766]
  5. Chan SN, Prasad R, and Matsudaira P. Genetic Selection Based on a Ste6*C-HA-Ura3 Substrate Identifies New Cytosolic Quality Control Alleles in Saccharomyces cerevisiae. G3 (Bethesda) 2020; 10(6):1879-1891. [PMID: 32299823]
  6. Matsudaira PT, and Verma CS. Editorial. Prog. Biophys. Mol. Biol. 2019;. [PMID: 30951764]
  7. Wadduwage DN, Singh VR, Choi H, Yaqoob Z, Heemskerk H, Matsudaira P, and So PTC. Near-common-path interferometer for imaging Fourier-transform spectroscopy in wide-field microscopy. Optica 2017; 4(5):546-556. [PMID: 29392168]
  8. Zheng JY, Han SP, Chiu Y, Yip AK, Boichat N, Zhu SW, Zhong J, and Matsudaira P. Epithelial Monolayers Coalesce on a Viscoelastic Substrate through Redistribution of Vinculin. Biophys. J. 2017;. [PMID: 28844472]
  9. Zheng JY, Tan HL, Matsudaira PT, and Choo A. Excess reactive oxygen species production mediates monoclonal antibody-induced human embryonic stem cell death via oncosis. Cell Death Differ. 2017;. [PMID: 28106884]
  10. . https://www.ncbi.nlm.nih.gov/pubmed/28007915

MBI Lab Members

The Chan Lab at the MBI-MPG Conference 2025!

Sep 15th, 2025|Comments Off on The Chan Lab at the MBI-MPG Conference 2025!

Congratulations to Kim Whye and Kosei for being selected for talks, and Boon Heng for winning the 'Best Poster' prize! Thanks to all who gave feedback on our work!

Rac-1 Regulated Cadherin Clusters Mark Naive Stem Cells

Sep 10th, 2025|Comments Off on Rac-1 Regulated Cadherin Clusters Mark Naive Stem Cells

Researchers from the Kanchanawong Lab at the Mechanobiology Institute, NUS discover a marker of ground-state pluripotent stem cells and what governs it.

Confined Migration Shapes the Bony Fate of Stem Cells

Sep 3rd, 2025|Comments Off on Confined Migration Shapes the Bony Fate of Stem Cells

Researchers from the Holle Lab at the Mechanobiology Institute, NUS discover that migration through confined spaces causes lasting nuclear changes in stem cells, biasing them toward bone formation.

P. Shakthi

Sep 3rd, 2025|Comments Off on P. Shakthi

Research Assistant, Dye & Michelot Groups

Lim Choon Kiat

Sep 2nd, 2025|Comments Off on Lim Choon Kiat

Senior Research Fellow, Li Group

Nicholas Chan Zhen Woon

Sep 2nd, 2025|Comments Off on Nicholas Chan Zhen Woon

Research Fellow, Yan Jie Group

Disrupted Cell-Matrix Interactions Drives Aging and Reveals New Paths for Skin Regeneration

Aug 27th, 2025|Comments Off on Disrupted Cell-Matrix Interactions Drives Aging and Reveals New Paths for Skin Regeneration

Researchers from the Li Lab discover how α5-integrin–FN interactions preserve dermal integrity, offering new insights for antiaging strategies targeting ECM organization and fibroblast function.

DECIPHERing the Role of Cell-Matrix Interactions in Ageing Heart Health

Aug 22nd, 2025|Comments Off on DECIPHERing the Role of Cell-Matrix Interactions in Ageing Heart Health

Researchers from the Soft Nano-Biomaterials Lab at MBI developed a material system to enable precise investigation into how individual ECM properties affect cultured heart cells.

Seeking Postdoctoral Research Fellow in the research group of Dr. Tsuyoshi Hirashima at the Mechanobiology Institute, NUS

Aug 20th, 2025|Comments Off on Seeking Postdoctoral Research Fellow in the research group of Dr. Tsuyoshi Hirashima at the Mechanobiology Institute, NUS

We are seeking to recruit a Postdoctoral Research Fellow in the research group of Dr. Tsuyoshi Hirashima at the Mechanobiology Institute, NUS.

Scientists Develop AI-Driven Tool to Map 3D Cellular Landscapes

Aug 15th, 2025|Comments Off on Scientists Develop AI-Driven Tool to Map 3D Cellular Landscapes

Researchers from the Beghin Lab at the Mechanobiology Institute, NUS combine DeepStar3D algorithm and 3DCellScope interface to develop an experimental tool for real-time interaction with cell data.

About the National University of Singapore

About NUSA leading global university centred in Asia, NUS is Singapore's flagship university, offering a global approach to education and research with a focus on Asian perspectives and expertise.

About the Mechanobiology Institute, National University of Singapore

About MBIOne of four Research Centres of Excellence at NUS, MBI is working to identify, measure and describe how the forces for motility and morphogenesis are expressed at the molecular, cellular and tissue level.
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