Paul MatsudairaManagement2020-08-12T10:32:27+08:00
Paul MATSUDAIRA

Paul MATSUDAIRA

Founding Deputy Director and Professor, Mechanobiology Institute, National University of Singapore

dbsmpt@nus.edu.sg

Curriculum Vitae

Research Program
Leader, Mechanotransduction in Tissues

Affiliations
Emeritus Professor, Department of Biological Sciences, National University of Singapore

Emeritus Professor, Centre for BioImaging Sciences, Department of Biological Sciences, National University of Singapore

Paul Matsudaira

Emeritus Professor

Research Areas

Mechanobiology of cells and tissues on viscoelastic surfaces, nanoscale dynamics, biomaging sciences.

Research Interests

The Matsudaira Lab studies the role of mechanics in epithelial tissue migration and remodeling during development and disease. The organization and migration of epithelial tissues are sensitive to the underlying substratum, especially on visco-elastic substrates. This range of stiffness defines the environment of most basement membranes, cell-cell interactions, and early developmental processes. On the one hand, the lab is interested in the mechanical signatures of the development of chirality, convergence, and extension during the early steps in morphogenesis of the Zebrafish embryo. Other studies are focused on the role of substrate viscoelasticity in tissue remodeling during disease and its regulation by cell-matrix and cell-cell signaling pathways. In order to study complex, multi-scale dynamics the lab develops and applies novel imaging methods such as in situ TEM and strain light-sheet microscopy.

Biography

Formerly a biology and bioengineering professor at the Massachusetts Institute of Technology (MIT), Paul Matsudaira has studied the cytoskeleton since graduating from college. He was the EM technician of Tom Schroeder where he helped investigate the role of microfilaments in the contractile ring. As a graduate student of Dave Burgess he identified the structure and function of the intestine brush border cytoskeleton. Following postdoctoral research on the assembly of actin bundles at the MPI Biophysical Chemistry with Klaus Weber and the MRC LMB with Alan Weeds, Paul started his academic career at the Whitehead Institute and MIT where his lab studied biophysics of actin and other polymer protein bundles, mechanics of polymers and single cells motility, and developed microanalytical methods. In 2009, he moved to Singapore to establish the Centre for BioImaging Sciences, head the Department of Biological Sciences, and help found the Mechanobiology Institute, National University of Singapore.

Education

PhD in Biological Sciences from Dartmouth College, Hanover, New Hampshire

Selected Publications (5 of 177)

  1. Zheng J, Han SP, Chiu YJ, Yip AK, Boichat N, Pauli AR, Zhu S, Matsudaira P. 2017 Substrate viscoelasticity induces coalescence of epithelial monolayers via subcellular redistribution of vinculin. Biophys J. 113:1585-98.
  2. Loh D, Sen S, Bosman M, Tan SF, Zhong J, Nijhuis C, Kral P, Matsudaira P, Mirsaidov U. 2016 Multi-step nucleation of nanocrystals in aqueous solution. Nat. Chem 9:77-82.
  3. Ai Kia Yip, Keng-Hwee Chiam and Paul Matsudaira. Traction stress analysis and modeling reveal that amoeboid migration in confined spaces is accompanied by expansive forces and requires the structural integrity of the membrane–cortex interactions. Integrative Biology, 2015, DOI: 10.1039/ C4IB00245H. First published online 27 May 2015
  4. Bhattacharya D, Singh V R, Zhi C, Peter T C, Matsudaira P, Barbastathis G. 2012. Three dimensional HiLo-based structured illumination for a Digital Scanned Laser Sheet Microscopy (DSLM) in thick tissue imaging. Optics Express 20(25):27337-27347.
  5. Mirsaidov UM, Zheng H, Bhattacharya D, Casana Y, Matsudaira P. 2012. Imaging protein structure in water at 2.7 nm resolution by TEM. Biophys J. 102:L15-7.

Recent Publications

  1. Zhu S, Loo YT, Veerapathiran S, Loo TYJ, Tran BN, Teh C, Zhong J, Matsudaira P, Saunders TE, and Wohland T. Receptor binding and tortuosity explain morphogen local-to-global diffusion coefficient transition. Biophys J 2024;. [PMID: 39049492]
  2. Tavakoli S, Zhu S, and Matsudaira P. Cell clusters containing intestinal stem cells line, the zebrafish intestine intervillus pocket. iScience 2022; 25(5):104280. [PMID: 35586068]
  3. Bhattacharya D, Zhong J, Tavakoli S, Kabla A, and Matsudaira P. Strain maps characterize the symmetry of convergence and extension patterns during zebrafish gastrulation. Sci Rep 2021; 11(1):19357. [PMID: 34588480]
  4. Wu H, Ng DTW, Cheong I, and Matsudaira P. The degradation-promoting roles of deubiquitinases Ubp6 and Ubp3 in cytosolic and ER protein quality control. PLoS ONE 2020; 15(5):e0232755. [PMID: 32401766]
  5. Chan SN, Prasad R, and Matsudaira P. Genetic Selection Based on a Ste6*C-HA-Ura3 Substrate Identifies New Cytosolic Quality Control Alleles in Saccharomyces cerevisiae. G3 (Bethesda) 2020; 10(6):1879-1891. [PMID: 32299823]
  6. Matsudaira PT, and Verma CS. Editorial. Prog. Biophys. Mol. Biol. 2019;. [PMID: 30951764]
  7. Wadduwage DN, Singh VR, Choi H, Yaqoob Z, Heemskerk H, Matsudaira P, and So PTC. Near-common-path interferometer for imaging Fourier-transform spectroscopy in wide-field microscopy. Optica 2017; 4(5):546-556. [PMID: 29392168]
  8. Zheng JY, Han SP, Chiu Y, Yip AK, Boichat N, Zhu SW, Zhong J, and Matsudaira P. Epithelial Monolayers Coalesce on a Viscoelastic Substrate through Redistribution of Vinculin. Biophys. J. 2017;. [PMID: 28844472]
  9. Zheng JY, Tan HL, Matsudaira PT, and Choo A. Excess reactive oxygen species production mediates monoclonal antibody-induced human embryonic stem cell death via oncosis. Cell Death Differ. 2017;. [PMID: 28106884]
  10. . https://www.ncbi.nlm.nih.gov/pubmed/28007915

MBI Lab Members

A Cell Never Forgets: How Prior Environments Affect Confined Cell Migration

May 21st, 2026|Comments Off on A Cell Never Forgets: How Prior Environments Affect Confined Cell Migration

Researchers from the Holle Lab at the Mechanobiology Institute, NUS discover that cells retain mechanical memory that influences subsequent migration despite environmental changes, suggesting broader implications for understanding wound healing, fibrosis and cancer metastasis.

The Young Lab Welcome Visitors from Raffles Girls’ School!

May 5th, 2026|Comments Off on The Young Lab Welcome Visitors from Raffles Girls’ School!

The Young Lab hosted visitors from Raffles Girls' School as part of MBI's outreach event.

Force sensing in cells at the single molecule level

May 5th, 2026|Comments Off on Force sensing in cells at the single molecule level

Professor Yan Jie and his team from the Mechanobiology Institute collaborated with Professor Liu Xiaogang from the Department of Chemistry, NUS, to determine the exact force needed to activate Piezo1, via a DNA-based approach.

MBI Hosts Students from Raffles Girls School!

Apr 29th, 2026|Comments Off on MBI Hosts Students from Raffles Girls School!

MBI hosted students from Raffles Girls School on 28 April 2026, for an outreach session designed to spark curiosity about mechanobiology and research careers.

Farewell Avery, All the Best!

Apr 27th, 2026|Comments Off on Farewell Avery, All the Best!

Farewell to Dr. Avery Rui Sun, a former PhD student at the Young Lab from 2021-2026!

Ting, Hatice and Raageshwari in ASBTE Conference 2026

Apr 27th, 2026|Comments Off on Ting, Hatice and Raageshwari in ASBTE Conference 2026

The Young Lab attends the 2026 Australasian Society for Biomaterials and Tissue Engineering (ASBTE) from 30 Mar-2 Apr 2026!

Raageshwari and Hatice visit Prof. Khoon Lim’s Lab in USyd

Apr 20th, 2026|Comments Off on Raageshwari and Hatice visit Prof. Khoon Lim’s Lab in USyd

Raageshwari and Hatice from the Young Lab visits Prof. Khoon Lim's lab in USyd.

Pallavi Chinnu Varghese

Apr 8th, 2026|Comments Off on Pallavi Chinnu Varghese

Research Fellow, Young Group

Takafumi Sakai

Apr 8th, 2026|Comments Off on Takafumi Sakai

Research Fellow, Hirashima Group

Paulina Magdalena Pokorska

Apr 8th, 2026|Comments Off on Paulina Magdalena Pokorska

Research Fellow, Li Group

Piyush Amitabh

Apr 8th, 2026|Comments Off on Piyush Amitabh

Research Fellow, Dye Group

Katherine Anne Lau Enqi

Mar 27th, 2026|Comments Off on Katherine Anne Lau Enqi

Research Assistant, Young Group

About the National University of Singapore

About NUSA leading global university centred in Asia, NUS is Singapore's flagship university, offering a global approach to education and research with a focus on Asian perspectives and expertise.

About the Mechanobiology Institute, National University of Singapore

About MBIOne of four Research Centres of Excellence at NUS, MBI is working to identify, measure and describe how the forces for motility and morphogenesis are expressed at the molecular, cellular and tissue level.
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