GV SHIVASHANKAR
Principal Investigator, Mechanobiology Institute, IFOM-NUS Chair Professor, National University of Singapore
shiva.gvs@gmail.com
+65 6516 2712 ext 62712
Level 10 T-Lab
National University of Singapore
5A Engineering Drive 1
Singapore 117411
Affiliations
Head, IFOM-NUS Joint Research Laboratory, National University of Singapore
Spark-In-Science Program
Spark-in-Science is a non-profit initiative aimed at igniting scientific temper in high school and pre-university students.
In the News
- Today Online: Study to detect cancer before symptoms develop shows promise
- Straits Times: NUS research: Squeezing mature cells to become stem cells
- Channel News Asia: Becoming Human, Episode 2: Unnatural Genius
The Shivashankar Lab is hiring multiple PhD and Postdoctoral positions starting in Jan 2020. Learn more.
Defining the pattern of cell death and replacement
Researchers from the Toyama Lab at MBI reveal how mechanical factors control apoptosis and cell replacement. https://www.mbi.nus.edu.sg/featured-research/defining-the-pattern-of-cell-death-and-replacement
The Chan lab celebrates two new papers!
Congratulations to the teams! (Read the publication here and the preprint here)
Seeking Research Associate in Molecular and Cell Biology in the Kanchanawong Lab at the Mechanobiology Institute, NUS
We are seeking a Research Associate in Molecular and Cell Biology to join the Kanchanawong at the Mechanobiology Institute, NUS
GV Shivashankar
Principal Investigator (2011-2019)
Research Areas
Nuclear mechanics, 3D chromosome organization, genome regulation, disease diagnostics
Nuclear Mechanogenomics & Cancer Diagnostics Laboratory
Shivashankar’s lab pursues research in understanding the role of cell mechanics on nuclear mechanotransduction and genome regulation.
Extra-cellular micro-environmental signals are transduced to the nucleus to regulate diverse biological processes including cellular differentiation, development and homeostasis; but the underlying mechanisms are still unclear. In this context, how such micro-environmental signals alter nuclear mechanical architecture and how it integrates with the 3D organization of chromosomes and transcription networks are rather unexplored. Using a multidisciplinary approach combining high resolution optical imaging, quantitative single-cell biology, machine learning and functional genomics, our laboratory investigates the principles underlying the coupling between nuclear mechanics and genome regulation. Our recent and ongoing work provides modular links between cellular geometry and nuclear mechanics and its impact on transcription dependent 3D organization of chromosomes and reprogramming. Such modular links define the normal state of cells and are altered during diseases. Hence our studies also have profound impact on developing single-cell nuclear biomechanical markers for early disease diagnosis and therapeutic intervention.
Biography
Shivashankar is a principal investigator at the Mechanobiology Institute, National University of Singapore. His laboratory is focused on understanding the role of cell mechanics on nuclear mechanotransduction and genome regulation in living cells using a multi-disciplinary approach. He carried out his PhD research at the Rockefeller University (1994-1999) and Postdoctoral research at NEC Research Institute, Princeton USA (1999-2000). He started his laboratory at the National Center for Biological Sciences, TIFR- Bangalore, India (2000-2009) before relocating to a tenured faculty position at the National University of Singapore in 2009. He was the Deputy Director of the Mechanobiology Institute (2011-2019). More recently he also heads a joint research laboratory with the FIRC Institute of Molecular Oncology (IFOM), Milan, Italy and was appointed as an IFOM-NUS Chair Professor in 2014. His scientific awards include the Birla Science Prize (2006), the Swarnajayanthi Fellowship (2007), and he was elected to the Indian Academy of Sciences (2010) and to the EMBO membership (2019). He will be relocating to a tenured Full Professorship at ETH Zurich jointly with the Paul Scherrer Institute, Switzerland, to start the Laboratory of Mechano-Genomics in January 2020.
Education
PhD The Rockefeller University, USA
Funding
Mechanobiology Institute, Ministry of Education Tier-3 Co-Investigator Grant & IFOM-MBI Joint Research Laboratory, Singapore.
Recent Publications
- Mitra A, Cutiongco MFA, Burla R, Zeng Y, Na Q, Kong M, Vinod B, Nai MH, Hübner B, Ludwig A, Lim CT, Shivashankar GV, Saggio I, and Zhao W. Acute chromatin decompaction stiffens the nucleus as revealed by nanopillar-induced nuclear deformation in cells. Proc Natl Acad Sci U S A 2025; 122(19):e2416659122. [PMID: 40343993]
- Das R, Sakaue T, Shivashankar GV, Prost J, and Hiraiwa T. Chromatin Remodeling Due to Transient-Link-and-Pass Activity Enhances Subnuclear Dynamics. Phys Rev Lett 2024; 132(5):058401. [PMID: 38364140]
- Jiang K, Lim SB, Xiao J, Jokhun DS, Shang M, Song X, Zhang P, Liang L, Low BC, Shivashankar GV, and Lim CT. Deleterious Mechanical Deformation Selects Mechanoresilient Cancer Cells with Enhanced Proliferation and Chemoresistance. Adv Sci (Weinh) 2023;:e2201663. [PMID: 37218524]
- Das R, Sakaue T, Shivashankar GV, Prost J, and Hiraiwa T. How enzymatic activity is involved in chromatin organization. Elife 2022; 11. [PMID: 36472500]
- Yuan L, Roy B, Ratna P, Uhler C, and Shivashankar GV. Lateral confined growth of cells activates Lef1 dependent pathways to regulate cell-state transitions. Sci Rep 2022; 12(1):17318. [PMID: 36243826]
- Venkatachalapathy S, Sreekumar D, Ratna P, and Shivashankar GV. Actomyosin contractility as a mechanical checkpoint for cell state transitions. Sci Rep 2022; 12(1):16063. [PMID: 36163393]
- Venkatachalapathy S, Jokhun DS, Andhari M, and Shivashankar GV. Single cell imaging-based chromatin biomarkers for tumor progression. Sci Rep 2021; 11(1):23041. [PMID: 34845273]
- Ghanbarzadeh Nodehi S, Shivashankar GV, Prost J, and Mohammad-Rafiee F. The characteristics of nuclear membrane fluctuations in stem cells. J R Soc Interface 2021; 18(176):20201010. [PMID: 33715401]
- Yang KD, Belyaeva A, Venkatachalapathy S, Damodaran K, Katcoff A, Radhakrishnan A, Shivashankar GV, and Uhler C. Multi-domain translation between single-cell imaging and sequencing data using autoencoders. Nat Commun 2021; 12(1):31. [PMID: 33397893]
- Lee Y, and Shivashankar GV. Analysis of transcriptional modules during human fibroblast ageing. Sci Rep 2020; 10(1):19086. [PMID: 33154459]
Lab Members
What are Arf GTPases?
What are Arf GTPases? ADP-ribosylation factor (Arf) GTPases are a subfamily of the Ras superfamily of small GTPases. Arf proteins perform diverse and critical functions in fundamental cellular processes like membrane trafficking, lipid modification, [...]
What are Rab GTPases?
What are Rab GTPases? The Rab proteins constitute the largest family of small GTPases belonging to the Ras superfamily, with approximately 70 members identified in humans. Rab GTPases are the primary regulators of the [...]
What are Ran GTPases?
What are Ran GTPases? The Ran (Ran-related or Ras-like nuclear) protein is the single member of the Ran subfamily, and the most abundant small GTPase in the cell. Like the other small GTPases, Ran [...]
What are Ras GTPases?
What are Ras GTPases? The Ras family of small GTPases were originally discovered during a search for oncogenic retroviruses. Named for their ability to cause rat sarcomas, human RAS genes were identified in 1982 [...]
What are Rho GTPases?
What are Rho GTPases? The Ras homologous (Rho) protein family is a member of the Ras superfamily of small GTPases. Small GTPases are monomeric proteins and function as molecular switches that turn “on” or [...]
What are focal adhesions?
What are focal adhesions? Focal adhesions are integrin-containing, multi-protein structures that form mechanical links between intracellular actin bundles and the extracellular matrix or substrate in many cell types [1]. The formation and function of [...]
Are focal adhesions dynamic?
Are focal adhesion dynamic? In migrating cells, turnover of adhesion components happens throughout the adhesion life cycle, with a shift in equilibrium between rates of recruitment and removal during the various stages. At the [...]
How are focal adhesion dynamics regulated?
How are focal adhesion dynamics regulated? The highly dynamic and complex molecular composition of focal adhesions is regulated by a number of physico-chemical signals arising from its surroundings, such as extracellular matrix stiffness, topography, [...]
Are focal adhesions dynamic?
Are focal adhesion dynamic? In migrating cells, turnover of adhesion components happens throughout the adhesion life cycle, with a shift in equilibrium between rates of recruitment and removal during the various stages. At the [...]
How do nascent adhesions grow into mature focal adhesions?
How do nascent adhesions grow into mature focal adhesions? Nascent adhesions undergo a transient phase of rapid assembly and disassembly through which a fraction of adhesions survive to evolve into more stable and larger [...]
What is the role of Rho GTPases in the regulation of focal adhesion assembly?
What is the role of Rho GTPases in the regulation of focal adhesion assembly? Synergistic integrin-syndecan signaling The rate and extent of focal adhesion formation and maturation are regulated by factors such as synergistic [...]
What is the role of integrin clustering in focal adhesion assembly?
What is the role of integrin clustering in focal adhesion assembly? There is still much debate over the mechanisms of signal transduction following integrin-ligand binding, however recent studies reveal that irrespective of the global [...]
