GV SHIVASHANKAR
Principal Investigator, Mechanobiology Institute, IFOM-NUS Chair Professor, National University of Singapore
shiva.gvs@gmail.com
+65 6516 2712 ext 62712
Level 10 T-Lab
National University of Singapore
5A Engineering Drive 1
Singapore 117411
Affiliations
Head, IFOM-NUS Joint Research Laboratory, National University of Singapore
Spark-In-Science Program
Spark-in-Science is a non-profit initiative aimed at igniting scientific temper in high school and pre-university students.
In the News
- Today Online: Study to detect cancer before symptoms develop shows promise
- Straits Times: NUS research: Squeezing mature cells to become stem cells
- Channel News Asia: Becoming Human, Episode 2: Unnatural Genius
The Shivashankar Lab is hiring multiple PhD and Postdoctoral positions starting in Jan 2020. Learn more.
Fan Shicheng
Research Fellow, Lim Group
Arceo Alaine Vien Villanueva
Research Assistant, Dye & Michelot Group
Xixun Lu
SPS Intern, Chan Group
GV Shivashankar
Principal Investigator (2011-2019)
Research Areas
Nuclear mechanics, 3D chromosome organization, genome regulation, disease diagnostics
Nuclear Mechanogenomics & Cancer Diagnostics Laboratory
Shivashankar’s lab pursues research in understanding the role of cell mechanics on nuclear mechanotransduction and genome regulation.
Extra-cellular micro-environmental signals are transduced to the nucleus to regulate diverse biological processes including cellular differentiation, development and homeostasis; but the underlying mechanisms are still unclear. In this context, how such micro-environmental signals alter nuclear mechanical architecture and how it integrates with the 3D organization of chromosomes and transcription networks are rather unexplored. Using a multidisciplinary approach combining high resolution optical imaging, quantitative single-cell biology, machine learning and functional genomics, our laboratory investigates the principles underlying the coupling between nuclear mechanics and genome regulation. Our recent and ongoing work provides modular links between cellular geometry and nuclear mechanics and its impact on transcription dependent 3D organization of chromosomes and reprogramming. Such modular links define the normal state of cells and are altered during diseases. Hence our studies also have profound impact on developing single-cell nuclear biomechanical markers for early disease diagnosis and therapeutic intervention.
Biography
Shivashankar is a principal investigator at the Mechanobiology Institute, National University of Singapore. His laboratory is focused on understanding the role of cell mechanics on nuclear mechanotransduction and genome regulation in living cells using a multi-disciplinary approach. He carried out his PhD research at the Rockefeller University (1994-1999) and Postdoctoral research at NEC Research Institute, Princeton USA (1999-2000). He started his laboratory at the National Center for Biological Sciences, TIFR- Bangalore, India (2000-2009) before relocating to a tenured faculty position at the National University of Singapore in 2009. He was the Deputy Director of the Mechanobiology Institute (2011-2019). More recently he also heads a joint research laboratory with the FIRC Institute of Molecular Oncology (IFOM), Milan, Italy and was appointed as an IFOM-NUS Chair Professor in 2014. His scientific awards include the Birla Science Prize (2006), the Swarnajayanthi Fellowship (2007), and he was elected to the Indian Academy of Sciences (2010) and to the EMBO membership (2019). He will be relocating to a tenured Full Professorship at ETH Zurich jointly with the Paul Scherrer Institute, Switzerland, to start the Laboratory of Mechano-Genomics in January 2020.
Education
PhD The Rockefeller University, USA
Funding
Mechanobiology Institute, Ministry of Education Tier-3 Co-Investigator Grant & IFOM-MBI Joint Research Laboratory, Singapore.
Recent Publications
- Mitra A, Cutiongco MFA, Burla R, Zeng Y, Na Q, Kong M, Vinod B, Nai MH, Hübner B, Ludwig A, Lim CT, Shivashankar GV, Saggio I, and Zhao W. Acute chromatin decompaction stiffens the nucleus as revealed by nanopillar-induced nuclear deformation in cells. Proc Natl Acad Sci U S A 2025; 122(19):e2416659122. [PMID: 40343993]
- Das R, Sakaue T, Shivashankar GV, Prost J, and Hiraiwa T. Chromatin Remodeling Due to Transient-Link-and-Pass Activity Enhances Subnuclear Dynamics. Phys Rev Lett 2024; 132(5):058401. [PMID: 38364140]
- Jiang K, Lim SB, Xiao J, Jokhun DS, Shang M, Song X, Zhang P, Liang L, Low BC, Shivashankar GV, and Lim CT. Deleterious Mechanical Deformation Selects Mechanoresilient Cancer Cells with Enhanced Proliferation and Chemoresistance. Adv Sci (Weinh) 2023;:e2201663. [PMID: 37218524]
- Das R, Sakaue T, Shivashankar GV, Prost J, and Hiraiwa T. How enzymatic activity is involved in chromatin organization. Elife 2022; 11. [PMID: 36472500]
- Yuan L, Roy B, Ratna P, Uhler C, and Shivashankar GV. Lateral confined growth of cells activates Lef1 dependent pathways to regulate cell-state transitions. Sci Rep 2022; 12(1):17318. [PMID: 36243826]
- Venkatachalapathy S, Sreekumar D, Ratna P, and Shivashankar GV. Actomyosin contractility as a mechanical checkpoint for cell state transitions. Sci Rep 2022; 12(1):16063. [PMID: 36163393]
- Venkatachalapathy S, Jokhun DS, Andhari M, and Shivashankar GV. Single cell imaging-based chromatin biomarkers for tumor progression. Sci Rep 2021; 11(1):23041. [PMID: 34845273]
- Ghanbarzadeh Nodehi S, Shivashankar GV, Prost J, and Mohammad-Rafiee F. The characteristics of nuclear membrane fluctuations in stem cells. J R Soc Interface 2021; 18(176):20201010. [PMID: 33715401]
- Yang KD, Belyaeva A, Venkatachalapathy S, Damodaran K, Katcoff A, Radhakrishnan A, Shivashankar GV, and Uhler C. Multi-domain translation between single-cell imaging and sequencing data using autoencoders. Nat Commun 2021; 12(1):31. [PMID: 33397893]
- Lee Y, and Shivashankar GV. Analysis of transcriptional modules during human fibroblast ageing. Sci Rep 2020; 10(1):19086. [PMID: 33154459]
Lab Members
What is the role of cadherin and nectin recruitment in adherens junction assembly?
What is the role of cadherin and nectin recruitment in adherens junction assembly? Cadherin Recruitment Type I cadherins, also known as classical cadherins, are commonly found in adherens junctions (AJs) and desmosomes. They are [...]
What is the role of adaptor proteins in the stabilization and function of core adherens junction components?
What is the role of adaptor proteins in the stabilization and function of core adherens junction components? Recruitment of plaque proteins to adherens junctions The difficulties in establishing a direct link between the α-catenin–β-catenin [...]
What is the role of the cytoskeleton in the regulation of cell-cell adhesions?
What is the role of the cytoskeleton in the regulation of cell-cell adhesions? Given the function and stability of clustered cell-cell adhesions is tightly coupled to the formation and function of the actin cytoskeleton, [...]
What are cell-matrix adhesions?
What are cell-matrix adhesions? The extracellular matrix and the basal lamina Cell-matrix adhesion is the interaction of a cell with the extracellular matrix, mediated by multi-protein adhesion structures such as focal adhesions, fibrillar adhesions [...]
What are cell-matrix receptors?
What are cell-matrix receptors? Interaction between cell-matrix receptors and their respective ligands are often the initial step in the formation of a cell-matrix adhesion. Several types of cell-matrix receptors have been identified, each interacting [...]
What is parvin?
What is parvin? The parvins are a family of actin binding proteins (known as α-, β- and γ-parvin in mammals) that are members of the actin linking functional module at cell-matrix adhesion sites (reviewed [...]
What is talin?
What is talin? Talin contains a 47-kDa N-terminal head, a neck and a 220kDa rod domain. The head domain comprises four subdomains termed F0, F1, F2 and F3, with the latter three forming a [...]
What is tensin?
What is tensin? Tensin is a cytoskeleton scaffolding protein that was named for its ability to form a bridge that maintains tension between the actin filaments and cell-matrix adhesion sites (reviewed in [1]). A [...]
What is zyxin?
What is Zyxin? Zyxin is enriched along actin filaments, stress fiber bundles, and at cell-cell or cell-matrix adhesion sites [1][2]. Zyxin is specifically found in more mature adhesions [3] and its absence in early [...]
How does integrin clustering affect integrin signalling?
How does integrin clustering affect integrin signaling? Localization of Integrin The concentration of β subunits is generally high while that of α subunit is the factor limiting the amount of heterodimers that localize on [...]
What is vinculin?
What is Vinculin? Vinculin is a protein that couples, transmits, transduces, and regulates mechanical force between the cytoskeleton and adhesion receptors (reviewed in [1]). Vinculin frequently links adhesion receptors (e.g. integrins) to the contractile [...]
What is the Canonical Wnt Receptor Signaling Pathway?
What is the Canonical Wnt Receptor Signaling Pathway? The canonical Wnt receptor signaling pathway is a series of molecular events that are initiated by the binding of Wnt proteins to the frizzled family of [...]
