GV SHIVASHANKAR
Principal Investigator, Mechanobiology Institute, IFOM-NUS Chair Professor, National University of Singapore
shiva.gvs@gmail.com
+65 6516 2712 ext 62712
Level 10 T-Lab
National University of Singapore
5A Engineering Drive 1
Singapore 117411
Affiliations
Head, IFOM-NUS Joint Research Laboratory, National University of Singapore
Spark-In-Science Program
Spark-in-Science is a non-profit initiative aimed at igniting scientific temper in high school and pre-university students.
In the News
- Today Online: Study to detect cancer before symptoms develop shows promise
- Straits Times: NUS research: Squeezing mature cells to become stem cells
- Channel News Asia: Becoming Human, Episode 2: Unnatural Genius
The Shivashankar Lab is hiring multiple PhD and Postdoctoral positions starting in Jan 2020. Learn more.
Biomaterial shows how ageing in the heart could be reversed
A new lab-grown material has revealed that some of the effects of ageing in the heart may be slowed and even reversed. The discovery could open the door to therapies that rejuvenate the heart by changing its cellular environment, rather than focusing on the heart cells themselves.Learn more
Rejuvenation of aged egg cells
MBI researchers collaborated with NUS Bia-Echo Asia Centre for Reproductive Longevity and Equality, based at the NUS Yong Loo Lin School of Medicine, to develop an innovative technique to significantly enhance the reproductive potential of aged oocytes, or immature egg cells, potentially paving the way for better outcomes of assisted reproductive technologies, such as in-vitro fertilisation (IVF), for older females. Learn more
Seeking Research Assistant in Cell Mechanics and Mechanobiology at the Mechanobiology Institute, NUS
We are seeking a Research Assistant in Cell Mechanics and Mechanobiology in the lab of Prof. Lim Chwee Teck at the Mechanobiology Institute, NUS.
GV Shivashankar
Principal Investigator (2011-2019)
Research Areas
Nuclear mechanics, 3D chromosome organization, genome regulation, disease diagnostics
Nuclear Mechanogenomics & Cancer Diagnostics Laboratory
Shivashankar’s lab pursues research in understanding the role of cell mechanics on nuclear mechanotransduction and genome regulation.
Extra-cellular micro-environmental signals are transduced to the nucleus to regulate diverse biological processes including cellular differentiation, development and homeostasis; but the underlying mechanisms are still unclear. In this context, how such micro-environmental signals alter nuclear mechanical architecture and how it integrates with the 3D organization of chromosomes and transcription networks are rather unexplored. Using a multidisciplinary approach combining high resolution optical imaging, quantitative single-cell biology, machine learning and functional genomics, our laboratory investigates the principles underlying the coupling between nuclear mechanics and genome regulation. Our recent and ongoing work provides modular links between cellular geometry and nuclear mechanics and its impact on transcription dependent 3D organization of chromosomes and reprogramming. Such modular links define the normal state of cells and are altered during diseases. Hence our studies also have profound impact on developing single-cell nuclear biomechanical markers for early disease diagnosis and therapeutic intervention.
Biography
Shivashankar is a principal investigator at the Mechanobiology Institute, National University of Singapore. His laboratory is focused on understanding the role of cell mechanics on nuclear mechanotransduction and genome regulation in living cells using a multi-disciplinary approach. He carried out his PhD research at the Rockefeller University (1994-1999) and Postdoctoral research at NEC Research Institute, Princeton USA (1999-2000). He started his laboratory at the National Center for Biological Sciences, TIFR- Bangalore, India (2000-2009) before relocating to a tenured faculty position at the National University of Singapore in 2009. He was the Deputy Director of the Mechanobiology Institute (2011-2019). More recently he also heads a joint research laboratory with the FIRC Institute of Molecular Oncology (IFOM), Milan, Italy and was appointed as an IFOM-NUS Chair Professor in 2014. His scientific awards include the Birla Science Prize (2006), the Swarnajayanthi Fellowship (2007), and he was elected to the Indian Academy of Sciences (2010) and to the EMBO membership (2019). He will be relocating to a tenured Full Professorship at ETH Zurich jointly with the Paul Scherrer Institute, Switzerland, to start the Laboratory of Mechano-Genomics in January 2020.
Education
PhD The Rockefeller University, USA
Funding
Mechanobiology Institute, Ministry of Education Tier-3 Co-Investigator Grant & IFOM-MBI Joint Research Laboratory, Singapore.
Recent Publications
- Mitra A, Cutiongco MFA, Burla R, Zeng Y, Na Q, Kong M, Vinod B, Nai MH, Hübner B, Ludwig A, Lim CT, Shivashankar GV, Saggio I, and Zhao W. Acute chromatin decompaction stiffens the nucleus as revealed by nanopillar-induced nuclear deformation in cells. Proc Natl Acad Sci U S A 2025; 122(19):e2416659122. [PMID: 40343993]
- Das R, Sakaue T, Shivashankar GV, Prost J, and Hiraiwa T. Chromatin Remodeling Due to Transient-Link-and-Pass Activity Enhances Subnuclear Dynamics. Phys Rev Lett 2024; 132(5):058401. [PMID: 38364140]
- Jiang K, Lim SB, Xiao J, Jokhun DS, Shang M, Song X, Zhang P, Liang L, Low BC, Shivashankar GV, and Lim CT. Deleterious Mechanical Deformation Selects Mechanoresilient Cancer Cells with Enhanced Proliferation and Chemoresistance. Adv Sci (Weinh) 2023;:e2201663. [PMID: 37218524]
- Das R, Sakaue T, Shivashankar GV, Prost J, and Hiraiwa T. How enzymatic activity is involved in chromatin organization. Elife 2022; 11. [PMID: 36472500]
- Yuan L, Roy B, Ratna P, Uhler C, and Shivashankar GV. Lateral confined growth of cells activates Lef1 dependent pathways to regulate cell-state transitions. Sci Rep 2022; 12(1):17318. [PMID: 36243826]
- Venkatachalapathy S, Sreekumar D, Ratna P, and Shivashankar GV. Actomyosin contractility as a mechanical checkpoint for cell state transitions. Sci Rep 2022; 12(1):16063. [PMID: 36163393]
- Venkatachalapathy S, Jokhun DS, Andhari M, and Shivashankar GV. Single cell imaging-based chromatin biomarkers for tumor progression. Sci Rep 2021; 11(1):23041. [PMID: 34845273]
- Ghanbarzadeh Nodehi S, Shivashankar GV, Prost J, and Mohammad-Rafiee F. The characteristics of nuclear membrane fluctuations in stem cells. J R Soc Interface 2021; 18(176):20201010. [PMID: 33715401]
- Yang KD, Belyaeva A, Venkatachalapathy S, Damodaran K, Katcoff A, Radhakrishnan A, Shivashankar GV, and Uhler C. Multi-domain translation between single-cell imaging and sequencing data using autoencoders. Nat Commun 2021; 12(1):31. [PMID: 33397893]
- Lee Y, and Shivashankar GV. Analysis of transcriptional modules during human fibroblast ageing. Sci Rep 2020; 10(1):19086. [PMID: 33154459]
Lab Members
What is autophagy?
What is autophagy? Autophagy, meaning self-eating, is an intracellular degradation system wherein unwanted cargo, such as old or damaged organelles, unneeded proteins, as well as pathogenic agents, are digested and the macromolecular contents from [...]
What is caveolar endocytosis?
What is caveolar endocytosis? Macropinocytosis or ‘cell drinking’ is a type of endocytosis that involves the nonspecific uptake of extracellular material, such as soluble molecules, nutrients, and antigens. First observed in 1931 by Warren [...]
Genome Regulation
Genome Regulation Genome regulation encompasses all facets of gene expression, from the biochemical modifications of DNA, to the physical arrangement of chromosomes and the activity of the transcription machinery. The genome regulation programs that [...]
What is phagocytosis?
What is phagocytosis? Phagocytosis is a process by which cells ingest large particles (> 0.5 micrometers) into membrane-bound vesicles called phagosomes, which are then targeted to the lysosomes for enzymatic degradation. The internalization of [...]
What is the nucleus?
What is the nucleus? The nucleus is an organelle found in most eukaryotic cells, the exception being red blood cells. In animal cells it is both the largest and stiffest organelle and is easily [...]
How does the nucleus facilitate mechanotransduction?
What properties of the nucleus facilitate mechanotransduction? Similar to the concept of long distance force propagation along the cytoskeleton, the prestressed nuclear state, which counterbalances intracellular forces from the cytoskeleton, enables mechanotransduction [1][2]. Both [...]
How is nuclear “prestress” maintained?
How is nuclear “prestress” maintained? As an integral part of cellular behavior, cells are sensitive to matrix rigidity, local geometry and stress or strain applied by external factors [1]. In recent years, it has [...]
How is the nucleus coupled to the cytoskeleton?
How is the nucleus coupled to the cytoskeleton? Cytoskeletal filaments bridge the nucleus to the plasma membrane, which in turn is anchored at sub-cellular sites to extracellular substrates via a plethora of proteins that [...]
What are chromatin, heterochromatin and euchromatin?
What is chromatin, heterochromatin and euchromatin? The human genome contains over 3 billion base pairs or nucleotides. These nucleotides, which are arranged in a linear sequence along DNA (deoxyribonucleic acid), encode every protein and [...]
What are chromosomes and chromosome territories?
What are chromosomes and chromosome territories? While metaphase chromosomes can be depicted as distinct bodies with well-defined shapes and sizes, interphase chromosomes are less uniform and, by filling the nuclear space, difficult to distinguish. [...]
What are nucleosomes?
What are nucleosomes? In order to fit DNA into the nucleus, it must be packaged into a highly compacted structure known as chromatin. In the first step of this process DNA is condensed into [...]
What is translation?
What is translation? Translation is a process that involves the synthesis of an amino acid chain from an mRNA blueprint. These polypeptide chains fold into functional proteins. Translation occurs outside the nucleus once nuclear [...]
