GV SHIVASHANKAR
Principal Investigator, Mechanobiology Institute, IFOM-NUS Chair Professor, National University of Singapore
shiva.gvs@gmail.com
+65 6516 2712 ext 62712
Level 10 T-Lab
National University of Singapore
5A Engineering Drive 1
Singapore 117411
Affiliations
Head, IFOM-NUS Joint Research Laboratory, National University of Singapore
Spark-In-Science Program
Spark-in-Science is a non-profit initiative aimed at igniting scientific temper in high school and pre-university students.
In the News
- Today Online: Study to detect cancer before symptoms develop shows promise
- Straits Times: NUS research: Squeezing mature cells to become stem cells
- Channel News Asia: Becoming Human, Episode 2: Unnatural Genius
The Shivashankar Lab is hiring multiple PhD and Postdoctoral positions starting in Jan 2020. Learn more.
The Nano-Heartbuilder: BNIP-2 Influences Mechanosensing in Cardiomyoblast Differentiation
Researchers from the Low Lab at MBI discover a crucial role for the scaffold protein BNIP-2 in orchestrating focal adhesion dynamics during early heart development, offering new insights into heart regeneration strategies.
Shedding Light on Local Microtubule Regulation of Focal Adhesions
Researchers from the Bershadsky Lab at MBI utilized optogenetics to unlock the role of microtubules in regulating focal adhesion disassembly, an important step in cell migration. http://www.mbi.nus.edu.sg/featured-research/microtubules-and-cell-movement-a-closer-look-at-focal-adhesion-disassembly
A Warm Welcome to the 2025 Ph.D Cohort!
MBI is delighted to welcome the 2025 cohort of Ph.D students. Coming from a rich tapestry of countries – China, Vietnam, Singapore, India and the Philippines – these eleven outstanding individuals bring with them interdisciplinary expertise and fresh perspectives that will enrich MBI’s vibrant research community.
GV Shivashankar
Principal Investigator (2011-2019)
Research Areas
Nuclear mechanics, 3D chromosome organization, genome regulation, disease diagnostics
Nuclear Mechanogenomics & Cancer Diagnostics Laboratory
Shivashankar’s lab pursues research in understanding the role of cell mechanics on nuclear mechanotransduction and genome regulation.
Extra-cellular micro-environmental signals are transduced to the nucleus to regulate diverse biological processes including cellular differentiation, development and homeostasis; but the underlying mechanisms are still unclear. In this context, how such micro-environmental signals alter nuclear mechanical architecture and how it integrates with the 3D organization of chromosomes and transcription networks are rather unexplored. Using a multidisciplinary approach combining high resolution optical imaging, quantitative single-cell biology, machine learning and functional genomics, our laboratory investigates the principles underlying the coupling between nuclear mechanics and genome regulation. Our recent and ongoing work provides modular links between cellular geometry and nuclear mechanics and its impact on transcription dependent 3D organization of chromosomes and reprogramming. Such modular links define the normal state of cells and are altered during diseases. Hence our studies also have profound impact on developing single-cell nuclear biomechanical markers for early disease diagnosis and therapeutic intervention.
Biography
Shivashankar is a principal investigator at the Mechanobiology Institute, National University of Singapore. His laboratory is focused on understanding the role of cell mechanics on nuclear mechanotransduction and genome regulation in living cells using a multi-disciplinary approach. He carried out his PhD research at the Rockefeller University (1994-1999) and Postdoctoral research at NEC Research Institute, Princeton USA (1999-2000). He started his laboratory at the National Center for Biological Sciences, TIFR- Bangalore, India (2000-2009) before relocating to a tenured faculty position at the National University of Singapore in 2009. He was the Deputy Director of the Mechanobiology Institute (2011-2019). More recently he also heads a joint research laboratory with the FIRC Institute of Molecular Oncology (IFOM), Milan, Italy and was appointed as an IFOM-NUS Chair Professor in 2014. His scientific awards include the Birla Science Prize (2006), the Swarnajayanthi Fellowship (2007), and he was elected to the Indian Academy of Sciences (2010) and to the EMBO membership (2019). He will be relocating to a tenured Full Professorship at ETH Zurich jointly with the Paul Scherrer Institute, Switzerland, to start the Laboratory of Mechano-Genomics in January 2020.
Education
PhD The Rockefeller University, USA
Funding
Mechanobiology Institute, Ministry of Education Tier-3 Co-Investigator Grant & IFOM-MBI Joint Research Laboratory, Singapore.
Recent Publications
- Mitra A, Cutiongco MFA, Burla R, Zeng Y, Na Q, Kong M, Vinod B, Nai MH, Hübner B, Ludwig A, Lim CT, Shivashankar GV, Saggio I, and Zhao W. Acute chromatin decompaction stiffens the nucleus as revealed by nanopillar-induced nuclear deformation in cells. Proc Natl Acad Sci U S A 2025; 122(19):e2416659122. [PMID: 40343993]
- Das R, Sakaue T, Shivashankar GV, Prost J, and Hiraiwa T. Chromatin Remodeling Due to Transient-Link-and-Pass Activity Enhances Subnuclear Dynamics. Phys Rev Lett 2024; 132(5):058401. [PMID: 38364140]
- Jiang K, Lim SB, Xiao J, Jokhun DS, Shang M, Song X, Zhang P, Liang L, Low BC, Shivashankar GV, and Lim CT. Deleterious Mechanical Deformation Selects Mechanoresilient Cancer Cells with Enhanced Proliferation and Chemoresistance. Adv Sci (Weinh) 2023;:e2201663. [PMID: 37218524]
- Das R, Sakaue T, Shivashankar GV, Prost J, and Hiraiwa T. How enzymatic activity is involved in chromatin organization. Elife 2022; 11. [PMID: 36472500]
- Yuan L, Roy B, Ratna P, Uhler C, and Shivashankar GV. Lateral confined growth of cells activates Lef1 dependent pathways to regulate cell-state transitions. Sci Rep 2022; 12(1):17318. [PMID: 36243826]
- Venkatachalapathy S, Sreekumar D, Ratna P, and Shivashankar GV. Actomyosin contractility as a mechanical checkpoint for cell state transitions. Sci Rep 2022; 12(1):16063. [PMID: 36163393]
- Venkatachalapathy S, Jokhun DS, Andhari M, and Shivashankar GV. Single cell imaging-based chromatin biomarkers for tumor progression. Sci Rep 2021; 11(1):23041. [PMID: 34845273]
- Ghanbarzadeh Nodehi S, Shivashankar GV, Prost J, and Mohammad-Rafiee F. The characteristics of nuclear membrane fluctuations in stem cells. J R Soc Interface 2021; 18(176):20201010. [PMID: 33715401]
- Yang KD, Belyaeva A, Venkatachalapathy S, Damodaran K, Katcoff A, Radhakrishnan A, Shivashankar GV, and Uhler C. Multi-domain translation between single-cell imaging and sequencing data using autoencoders. Nat Commun 2021; 12(1):31. [PMID: 33397893]
- Lee Y, and Shivashankar GV. Analysis of transcriptional modules during human fibroblast ageing. Sci Rep 2020; 10(1):19086. [PMID: 33154459]
Lab Members
How do focal adhesions act as molecular clutches in lamellipodia?
How do focal adhesions act as molecular clutches in lamellipodia? Once formed, focal adhesions essentially act as “molecular clutches”, promoting protrusion at the leading edge whilst suppressing membrane contraction (reviewed in [1] [2][3]). Adhesions [...]
How does force generation within lamellipodia facilitate cell translocation?
How does force generation within lamellipodia facilitate cell translocation? Interactions between actin filament networks and the focal adhesions to which they are linked results in the generation of forces. These forces may be exerted [...]
What mechanisms drive retraction of the trailing edge?
What mechanisms drive retraction of the trailing edge? Protrusion at the front and retraction at the rear are key force-generating processes at the cell periphery that culminate in the translocation of the cell. For [...]
What are invadopodia?
What are invadopodia? Invadopodia are actin-rich structures that are present at the basal surfaces of cells that are capable of crossing extracellular barriers, such as cancer cells. The primary function of invadopodia appears to [...]
What steps are involved in Lamellipodia assembly?
What steps are involved in Lamellipodia assembly? The lamellipodia is a distinct region of the cell that facilitates cell motility and various mechanosensing mechanisms. Lamellipodium assembly can be described in a series of defined [...]
What mechanisms drive invadopodia extension?
What mechanisms drive invadopodia extension? Following initiation by an appropriate signal, the actin cytoskeleton is reorganized to facilitate invadopodia formation. Although several kinases and GTPases are known to influence the transduction of extracellular signaling [...]
How do invadopodia degrade the extracellular matrix?
How do invadopodia degrade the extracellular matrix? The main function attributed to invadopodia is that of extracellular matrix (ECM) degradation, facilitated by the secretion of proteases. Maintenance of this process requires the delivery of [...]
What are the first steps in invadopodia assembly and disassembly?
What is the first step in invadopodia assembly? Initiation of invadopdia formation is highly complex, being influenced by various signalling cascades and phosphorylation events that occur following detection of a stimulant. For example, activation [...]
What are podosomes?
What are podosomes? Podosomes are actin-rich, adhesive structures that are present at the ventral surface of cells of the monocytic myeloid lineage, stimulated endothelial cells [1] and cultured Src-transformed cancer cells. These structures are [...]
What is the first step in podosome assembly?
What is the first step in podosome assembly? Podosome initiation and assembly is highly regulated, both spatially and temporally. Dendritic cells best exemplify the temporal regulation of podosome formation. Following activation by an antigen [...]
What are stress fibers?
What are stress fibers? Stress fibers are higher order cytoskeletal structures composed of cross-linked actin filament bundles, and in many cases, myosin motor proteins, that span a length of 1-2 micrometers [1]. At least [...]
What is the function of stress fibers?
What is the function of stress fibers? Stress fibers are contractile in nature. By exerting and maintaining tension on the underlying substratum, they form a key element of the mechanotransduction apparatus that links the [...]
