GV ShivashankarManagement2022-03-03T16:04:09+08:00
GV SHIVASHANKAR

GV SHIVASHANKAR

Principal Investigator, Mechanobiology Institute, IFOM-NUS Chair Professor, National University of Singapore

shiva.gvs@gmail.com
+65 6516 2712 ext 62712
Level 10 T-Lab
National University of Singapore
5A Engineering Drive 1
Singapore 117411

Curriculum Vitae

Affiliations
Head, IFOM-NUS Joint Research Laboratory, National University of Singapore

Spark-In-Science Program
Spark-in-Science is a non-profit initiative aimed at igniting scientific temper in high school and pre-university students.

In the News

The Shivashankar Lab is hiring multiple PhD and Postdoctoral positions starting in Jan 2020. Learn more.

GV Shivashankar

Principal Investigator (2011-2019)

Research Areas

Nuclear mechanics, 3D chromosome organization, genome regulation, disease diagnostics

Nuclear Mechanogenomics & Cancer Diagnostics Laboratory

Shivashankar’s lab pursues research in understanding the role of cell mechanics on nuclear mechanotransduction and genome regulation.

Extra-cellular micro-environmental signals are transduced to the nucleus to regulate diverse biological processes including cellular differentiation, development and homeostasis; but the underlying mechanisms are still unclear. In this context, how such micro-environmental signals alter nuclear mechanical architecture and how it integrates with the 3D organization of chromosomes and transcription networks are rather unexplored. Using a multidisciplinary approach combining high resolution optical imaging, quantitative single-cell biology, machine learning and functional genomics, our laboratory investigates the principles underlying the coupling between nuclear mechanics and genome regulation. Our recent and ongoing work provides modular links between cellular geometry and nuclear mechanics and its impact on transcription dependent 3D organization of chromosomes and reprogramming. Such modular links define the normal state of cells and are altered during diseases. Hence our studies also have profound impact on developing single-cell nuclear biomechanical markers for early disease diagnosis and therapeutic intervention.

Biography

Shivashankar is a principal investigator at the Mechanobiology Institute, National University of Singapore. His laboratory is focused on understanding the role of cell mechanics on nuclear mechanotransduction and genome regulation in living cells using a multi-disciplinary approach. He carried out his PhD research at the Rockefeller University (1994-1999) and Postdoctoral research at NEC Research Institute, Princeton USA (1999-2000). He started his laboratory at the National Center for Biological Sciences, TIFR- Bangalore, India (2000-2009) before relocating to a tenured faculty position at the National University of Singapore in 2009. He was the Deputy Director of the Mechanobiology Institute (2011-2019). More recently he also heads a joint research laboratory with the FIRC Institute of Molecular Oncology (IFOM), Milan, Italy and was appointed as an IFOM-NUS Chair Professor in 2014. His scientific awards include the Birla Science Prize (2006), the Swarnajayanthi Fellowship (2007), and he was elected to the Indian Academy of Sciences (2010) and to the EMBO membership (2019). He will be relocating to a tenured Full Professorship at ETH Zurich jointly with the Paul Scherrer Institute, Switzerland, to start the Laboratory of Mechano-Genomics in January 2020.

Education

PhD The Rockefeller University, USA

Funding

Mechanobiology Institute, Ministry of Education Tier-3 Co-Investigator Grant & IFOM-MBI Joint Research Laboratory, Singapore.

Recent Publications

  1. Mitra A, Cutiongco MFA, Burla R, Zeng Y, Na Q, Kong M, Vinod B, Nai MH, Hübner B, Ludwig A, Lim CT, Shivashankar GV, Saggio I, and Zhao W. Acute chromatin decompaction stiffens the nucleus as revealed by nanopillar-induced nuclear deformation in cells. Proc Natl Acad Sci U S A 2025; 122(19):e2416659122. [PMID: 40343993]
  2. Das R, Sakaue T, Shivashankar GV, Prost J, and Hiraiwa T. Chromatin Remodeling Due to Transient-Link-and-Pass Activity Enhances Subnuclear Dynamics. Phys Rev Lett 2024; 132(5):058401. [PMID: 38364140]
  3. Jiang K, Lim SB, Xiao J, Jokhun DS, Shang M, Song X, Zhang P, Liang L, Low BC, Shivashankar GV, and Lim CT. Deleterious Mechanical Deformation Selects Mechanoresilient Cancer Cells with Enhanced Proliferation and Chemoresistance. Adv Sci (Weinh) 2023;:e2201663. [PMID: 37218524]
  4. Das R, Sakaue T, Shivashankar GV, Prost J, and Hiraiwa T. How enzymatic activity is involved in chromatin organization. Elife 2022; 11. [PMID: 36472500]
  5. Yuan L, Roy B, Ratna P, Uhler C, and Shivashankar GV. Lateral confined growth of cells activates Lef1 dependent pathways to regulate cell-state transitions. Sci Rep 2022; 12(1):17318. [PMID: 36243826]
  6. Venkatachalapathy S, Sreekumar D, Ratna P, and Shivashankar GV. Actomyosin contractility as a mechanical checkpoint for cell state transitions. Sci Rep 2022; 12(1):16063. [PMID: 36163393]
  7. Venkatachalapathy S, Jokhun DS, Andhari M, and Shivashankar GV. Single cell imaging-based chromatin biomarkers for tumor progression. Sci Rep 2021; 11(1):23041. [PMID: 34845273]
  8. Ghanbarzadeh Nodehi S, Shivashankar GV, Prost J, and Mohammad-Rafiee F. The characteristics of nuclear membrane fluctuations in stem cells. J R Soc Interface 2021; 18(176):20201010. [PMID: 33715401]
  9. Yang KD, Belyaeva A, Venkatachalapathy S, Damodaran K, Katcoff A, Radhakrishnan A, Shivashankar GV, and Uhler C. Multi-domain translation between single-cell imaging and sequencing data using autoencoders. Nat Commun 2021; 12(1):31. [PMID: 33397893]
  10. Lee Y, and Shivashankar GV. Analysis of transcriptional modules during human fibroblast ageing. Sci Rep 2020; 10(1):19086. [PMID: 33154459]

Lab Members

Celestine Ze Qing Ho

Sep 27th, 2021|Comments Off on Celestine Ze Qing Ho

Research Assistant, Low Group

Cheam Mei Shan

Sep 24th, 2021|Comments Off on Cheam Mei Shan

Research Assistant, Toyama Group

Wang Yilin

Sep 24th, 2021|Comments Off on Wang Yilin

Research Fellow, Kanchanawong Group

Marion Florence Marchand

Sep 24th, 2021|Comments Off on Marion Florence Marchand

Research Fellow, Viasnoff Group

Invited talk in the RIMS workshop on Biofluid Mechanics of Reproduction (Kyoto, July 2021)

Aug 26th, 2021|Comments Off on Invited talk in the RIMS workshop on Biofluid Mechanics of Reproduction (Kyoto, July 2021)

Joe shares the latest work on ovarian hydraulics with expert scientists from Japan. Plenty of feedback and interactions! Looking forward to future collaborations in this exciting field!

Avery Rui Sun

Aug 25th, 2021|Comments Off on Avery Rui Sun

PhD Student, Biomedical Engineering Dept, Young Group

Vinod S/O Prabhakaran

Aug 25th, 2021|Comments Off on Vinod S/O Prabhakaran

Research Assistant, Young Group, Chan Group

MBI welcomes August 2021 intake of new graduate students

Aug 12th, 2021|Comments Off on MBI welcomes August 2021 intake of new graduate students

MBI is thrilled to welcome the latest intake of 13 incoming graduate students this August. Their induction marks the 1st batch of graduate students that MBI is accepting in the 2021/2022 academic year.

Lu Jung Hsuan

Aug 3rd, 2021|Comments Off on Lu Jung Hsuan

Research Assistant, Yan Jie Group

Lim Yong Ann Ben

Aug 3rd, 2021|Comments Off on Lim Yong Ann Ben

Research Assistant, Han Group

Jennifer Marlena

Aug 3rd, 2021|Comments Off on Jennifer Marlena

Research Assistant, Young Group

Seah Kwi Shan

Aug 3rd, 2021|Comments Off on Seah Kwi Shan

Research Fellow, Li Group

About the National University of Singapore

About NUSA leading global university centred in Asia, NUS is Singapore's flagship university, offering a global approach to education and research with a focus on Asian perspectives and expertise.

About the Mechanobiology Institute, National University of Singapore

About MBIOne of four Research Centres of Excellence at NUS, MBI is working to identify, measure and describe how the forces for motility and morphogenesis are expressed at the molecular, cellular and tissue level.
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